2OM9	Transcription	date	Jan 21, 2007
title	Ajulemic Acid, A Synthetic Cannabinoid Bound To Ppar Gamma
authors	A.L.B.Ambrosio, R.C.Garratt
compound		source
Molecule: Peroxisome Proliferator-Activated Receptor Gamma Chain: A, B, C, D Fragment: Ligand Binding Domain, Residues 232-505 Synonym: Ppar-Gamma,Nuclear Receptor Subfamily 1 Group C Me Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Pparg, Nr1c3 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet28a
symmetry	Space Group: P 1	R_factor 0.217 R_Free 0.267
crystal cell	length a length b length c angle alpha angle beta angle gamma 62.344 78.139 104.231 100.10 106.41 90.01
method	X-Ray Diffraction	resolution	2.80 Å
ligand	AJA	enzyme
Gene Ontology	Chain Function Process Component A, D, C, B
Primary reference	Ajulemic acid, a synthetic nonpsychoactive cannabinoid acid, bound to the ligand binding domain of the human peroxisome proliferator-activated receptor gamma., Ambrosio AL, Dias SM, Polikarpov I, Zurier RB, Burstein SH, Garratt RC, J Biol Chem. 2007 Jun 22;282(25):18625-33. Epub 2007 Apr 26. PMID:17462987

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (357 Kb) [Save to disk] Biological Unit Coordinates (2om9.pdb1.gz) 91 Kb Biological Unit Coordinates (2om9.pdb2.gz) 89 Kb Biological Unit Coordinates (2om9.pdb3.gz) 91 Kb Biological Unit Coordinates (2om9.pdb4.gz) 89 Kb LPC: Ligand-Protein Contacts for 2OM9 CSU: Contacts of Structural Units for 2OM9 Likely Quarternary Molecular Structure file(s) for 2OM9 Structure Factors (339 Kb) Retrieve 2OM9 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2OM9 from S2C, [Save to disk] Re-refined 2om9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2OM9 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2OM9

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2OM9, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2om9_B] [2om9_D] [2om9_C] [2om9_A] [2om9] SWISS-PROT database: [P37231] Domain organization of [PPARG_HUMAN] by SWISSPFAM Domain found in 2OM9: [HOLI ] by SMART

Other resources with information on 2OM9

Community annotation for 2OM9 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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