2OMY	Cell Invasion Cell Adhesion	date	Jan 23, 2007
title	Crystal Structure Of Inla S192nhec1 Complex
authors	T.Wollert, D.W.Heinz, W.D.Schubert
compound		source
Molecule: Internalin-A Chain: A Fragment: Internalin Domain Engineered: Yes Mutation: Yes		Organism_scientific: Listeria Monocytogenes Organism_taxid: 169963 Strain: Egd-E Gene: Inla Expression_system: Escherichia Coli Bl21 Expression_system_taxid: 511693 Expression_system_strain: Bl21 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pgex
Molecule: Epithelial-Cadherin Chain: B Fragment: N-Terminal Domain Of Human E-Cadherin Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Cdh1, Cdhe, Uvo Expression_system: Escherichia Coli Bl21 Expression_system_taxid: 511693 Expression_system_strain: Bl21 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pgex
symmetry	Space Group: P 21 21 21	R_factor 0.156 R_Free 0.211
crystal cell	length a length b length c angle alpha angle beta angle gamma 55.465 68.901 132.358 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.70 Å
ligand	CA, CL	enzyme
Gene Ontology	Chain Function Process Component B
Primary reference	Extending the host range of Listeria monocytogenes by rational protein design., Wollert T, Pasche B, Rochon M, Deppenmeier S, van den Heuvel J, Gruber AD, Heinz DW, Lengeling A, Schubert WD, Cell. 2007 Jun 1;129(5):891-902. PMID:17540170

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (116 Kb) [Save to disk] Biological Unit Coordinates (2omy.pdb1.gz) 109 Kb LPC: Ligand-Protein Contacts for 2OMY CSU: Contacts of Structural Units for 2OMY Likely Quarternary Molecular Structure file(s) for 2OMY Structure Factors (975 Kb) Retrieve 2OMY in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2OMY from S2C, [Save to disk] Re-refined 2omy structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2OMY in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2OMY

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2OMY, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2omy_B] [2omy] [2omy_A] SWISS-PROT database: [P12830] [P25146] Domain organization of [CADH1_HUMAN] [INLA_LISMO] by SWISSPFAM Domains found in 2OMY: [CA] [LRR ] by SMART

Other resources with information on 2OMY

Community annotation for 2OMY at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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