2ONM	Oxidoreductase	date	Jan 24, 2007
title	Human Mitochondrial Aldehyde Dehydrogenase Asian Variant, Al Complexed With Nad+
authors	H.N.Larson, T.D.Hurley
compound		source
Molecule: Aldehyde Dehydrogenase, Mitochondrial Precursor Chain: A, B, C, D, E, F, G, H, I, J, K, L Synonym: Aldh Class 2, Aldhi, Aldh-E2 Ec: 1.2.1.3 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Aldh2, Aldm Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pt-7-7
symmetry	Space Group: P 1	R_factor 0.230 R_Free 0.271
crystal cell	length a length b length c angle alpha angle beta angle gamma 96.201 104.854 162.359 78.99 82.14 88.55
method	X-Ray Diffraction	resolution	2.50 Å
ligand	ADP, EDO, GAI, NA, NAD	enzyme	Oxidoreductase E.C.1.2.1.3 BRENDA
Gene Ontology	Chain Function Process Component F, A, J, K, E, B, H, C, D, I, G, L electron transfer activity
Primary reference	Structural and functional consequences of coenzyme binding to the inactive asian variant of mitochondrial aldehyde dehydrogenase: roles of residues 475 and 487., Larson HN, Zhou J, Chen Z, Stamler JS, Weiner H, Hurley TD, J Biol Chem. 2007 Apr 27;282(17):12940-50. Epub 2007 Feb 27. PMID:17327228

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (955 Kb) [Save to disk] Biological Unit Coordinates (2onm.pdb1.gz) 326 Kb Biological Unit Coordinates (2onm.pdb2.gz) 328 Kb Biological Unit Coordinates (2onm.pdb3.gz) 315 Kb LPC: Ligand-Protein Contacts for 2ONM CSU: Contacts of Structural Units for 2ONM Likely Quarternary Molecular Structure file(s) for 2ONM Structure Factors (4330 Kb) Retrieve 2ONM in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2ONM from S2C, [Save to disk] Re-refined 2onm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2ONM in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2ONM

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2ONM, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2onm] [2onm_A] [2onm_F] [2onm_K] [2onm_B] [2onm_G] [2onm_I] [2onm_C] [2onm_E] [2onm_H] [2onm_L] [2onm_D] [2onm_J] SWISS-PROT database: [P05091] Domain organization of [ALDH2_HUMAN] by SWISSPFAM

Other resources with information on 2ONM

Community annotation for 2ONM at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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