2ONT A swapped dimer of the HIV-1 capsid C-terminal domain date
authors Ivanov, D., Tsodikov, O.V., Kasanov, J., Ellenberger, T., Wagner, G., Collins, T.
compound source
symmetry
R_factor
R_Free 0.294
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.40
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceDomain-swapped dimerization of the HIV-1 capsid C-terminal domain., Ivanov D, Tsodikov OV, Kasanov J, Ellenberger T, Wagner G, Collins T, Proc Natl Acad Sci U S A. 2007 Mar 13;104(11):4353-8. Epub 2007 Mar 5. PMID:17360528
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (17 Kb) [Save to disk]
  • Biological Unit Coordinates (2ont.pdb1.gz) 23 Kb
  • CSU: Contacts of Structural Units for 2ONT
  • Likely Quarternary Molecular Structure file(s) for 2ONT
  • Structure Factors (28 Kb)
  • Retrieve 2ONT in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2ONT from S2C, [Save to disk]
  • Re-refined 2ont structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2ONT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2ONT
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2ONT, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2ont] [2ont_A]
  • SWISS-PROT database: [P12497]
  • Domain organization of [POL_HV1N5] by SWISSPFAM
  • Other resources with information on 2ONT
  • Community annotation for 2ONT at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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