2OO4 Cell Cycle,Signaling Protein date Jan 25, 2007
title Structure Of Lnr-Hd (Negative Regulatory Region) From Human
authors W.R.Gordon, D.Vardar-Ulu, G.Histen, C.Sanchez-Irizarry, J.C.Aste S.C.Blacklow
compound source
Molecule: Neurogenic Locus Notch Homolog Protein 2
Chain: A, B
Fragment: Lnr-Hdnrr
Synonym: Notch 2, Hn2, Notch 2 Extracellular Truncation, No Intracellular Domain;
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Notch2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Rosetta Plyss (De3) Bl21
Expression_system_vector_type: Pet 15b
Expression_system_plasmid: Lnr-Hd
symmetry Space Group: P 21 21 21
R_factor 0.226 R_Free 0.268
crystal
cell
length a length b length c angle alpha angle beta angle gamma
45.372 74.706 139.412 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand CA, GOL, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructural basis for autoinhibition of Notch., Gordon WR, Vardar-Ulu D, Histen G, Sanchez-Irizarry C, Aster JC, Blacklow SC, Nat Struct Mol Biol. 2007 Apr;14(4):295-300. Epub 2007 Apr 1. PMID:17401372
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (156 Kb) [Save to disk]
  • Biological Unit Coordinates (2oo4.pdb1.gz) 74 Kb
  • Biological Unit Coordinates (2oo4.pdb2.gz) 74 Kb
  • LPC: Ligand-Protein Contacts for 2OO4
  • CSU: Contacts of Structural Units for 2OO4
  • Likely Quarternary Molecular Structure file(s) for 2OO4
  • Structure Factors (241 Kb)
  • Retrieve 2OO4 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2OO4 from S2C, [Save to disk]
  • Re-refined 2oo4 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2OO4 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2OO4
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2OO4, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2oo4_A] [2oo4_B] [2oo4]
  • SWISS-PROT database: [Q04721]
  • Domain organization of [NOTC2_HUMAN] by SWISSPFAM
  • Domains found in 2OO4: [NL] [NOD] [NODP ] by SMART
  • Other resources with information on 2OO4
  • Community annotation for 2OO4 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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