2OO9	Ligase	date	Jan 25, 2007
title	Crystal Structure Of The Uba Domain From Human C-Cbl Ubiquit
authors	G.Kozlov, K.Gehring
compound		source
Molecule: E3 Ubiquitin-Protein Ligase Cbl Chain: A, B, C Fragment: Uba Domain Synonym: Signal Transduction Protein Cbl, Proto-Oncogene C- Casitas B-Lineage Lymphoma Proto-Oncogene, Ring Finger Prot Ec: 6.3.2.- Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Cbl, Cbl2, Rnf55 Expression_system: Escherichia Coli Bl21 Expression_system_taxid: 511693 Expression_system_strain: Bl21 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pgex-4t-1
symmetry	Space Group: P 41 21 2	R_factor 0.216 R_Free 0.260
crystal cell	length a length b length c angle alpha angle beta angle gamma 82.025 82.025 56.194 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.10 Å
ligand	MSE	enzyme	Ligase E.C.6.3.2 BRENDA
note	2OO9 is a representative structure
Gene Ontology	Chain Function Process Component A, C, B
Primary reference	Structural basis for UBA-mediated dimerization of c-Cbl ubiquitin ligase., Kozlov G, Peschard P, Zimmerman B, Lin T, Moldoveanu T, Mansur-Azzam N, Gehring K, Park M, J Biol Chem. 2007 Sep 14;282(37):27547-55. Epub 2007 Jul 16. PMID:17635922

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (29 Kb) [Save to disk] Biological Unit Coordinates (2oo9.pdb1.gz) 16 Kb Biological Unit Coordinates (2oo9.pdb2.gz) 11 Kb LPC: Ligand-Protein Contacts for 2OO9 CSU: Contacts of Structural Units for 2OO9 Likely Quarternary Molecular Structure file(s) for 2OO9 Structure Factors (165 Kb) Retrieve 2OO9 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2OO9 from S2C, [Save to disk] Re-refined 2oo9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2OO9 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2OO9

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2OO9, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2oo9_B] [2oo9_C] [2oo9_A] [2oo9] SWISS-PROT database: [P22681] Domain organization of [CBL_HUMAN] by SWISSPFAM Domain found in 2OO9: [UBA ] by SMART

Other resources with information on 2OO9

Community annotation for 2OO9 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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