2OOB Ligase date Jan 25, 2007
title Crystal Structure Of The Uba Domain From Cbl-B Ubiquitin Lig Complex With Ubiquitin
authors G.Kozlov, K.Gehring
compound source
Molecule: E3 Ubiquitin-Protein Ligase Cbl-B
Chain: A
Fragment: Uba Domain
Synonym: Signal Transduction Protein Cbl-B, Sh3-Binding Pro B, Casitas B-Lineage Lymphoma Proto-Oncogene B, Ring Finger 56;
Ec: 6.3.2.-
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cblb, Rnf56
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex-4t-1

Molecule: Ubiquitin
Chain: B

Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913
symmetry Space Group: I 2 2 2
R_factor 0.197 R_Free 0.256
crystal
cell
length a length b length c angle alpha angle beta angle gamma
50.608 54.784 94.621 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand
enzyme Ligase E.C.6.3.2 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural basis for ubiquitin-mediated dimerization and activation of the ubiquitin protein ligase Cbl-b., Peschard P, Kozlov G, Lin T, Mirza IA, Berghuis AM, Lipkowitz S, Park M, Gehring K, Mol Cell. 2007 Aug 3;27(3):474-85. PMID:17679095
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (26 Kb) [Save to disk]
  • Biological Unit Coordinates (2oob.pdb1.gz) 21 Kb
  • CSU: Contacts of Structural Units for 2OOB
  • Likely Quarternary Molecular Structure file(s) for 2OOB
  • Structure Factors (159 Kb)
  • Retrieve 2OOB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2OOB from S2C, [Save to disk]
  • Re-refined 2oob structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2OOB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2OOB
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2OOB, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2oob_A] [2oob_B] [2oob]
  • SWISS-PROT database: [Q13191] [P62990]
  • Domain organization of [CBLB_HUMAN] [UBIQ_BOVIN] by SWISSPFAM
  • Domains found in 2OOB: [UBA] [UBQ ] by SMART
  • Other resources with information on 2OOB
  • Community annotation for 2OOB at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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