2OOM Rna date Jan 26, 2007
title Nmr Structure Of A Kissing Complex Formed Between The Tar Rn Of Hiv-1 And A Lnarna Aptamer
authors I.Lebars, T.Richard, C.Di Primo, J.J.Toulme
compound source
Molecule: Rna 16-Mer
Chain: A
Engineered: Yes
 Synthetic: Yes
Other_details: Prepared By In Vitro Transcription With T7 R Polymerase;

Molecule: Tar Rna Element Of Hiv-1
Chain: B
Engineered: Yes
Synthetic: Yes
Other_details: Purchased From Eurogentec
methodSolution NMR
ligand 10C, LCA enzyme
Primary referenceNMR structure of a kissing complex formed between the TAR RNA element of HIV-1 and a LNA-modified aptamer., Lebars I, Richard T, Di Primo C, Toulme JJ, Nucleic Acids Res. 2007;35(18):6103-14. Epub 2007 Sep 3. PMID:17768146
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (204 Kb) [Save to disk]
  • Biological Unit Coordinates (2oom.pdb1.gz) 17 Kb
  • LPC: Ligand-Protein Contacts for 2OOM
  • CSU: Contacts of Structural Units for 2OOM
  • Retrieve 2OOM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2OOM from S2C, [Save to disk]
    • View 2OOM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2OOM
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2OOM, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2oom_B] [2oom] [2oom_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 2OOM
  • Community annotation for 2OOM at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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