2OOT	Hydrolase	date	Jan 26, 2007
title	A High Resolution Structure Of Ligand-Free Human Glutamate Carboxypeptidase II
authors	C.Barinka, J.Lubkowski
compound		source
Molecule: Glutamate Carboxypeptidase 2 Chain: A Fragment: Residues 44-750 Synonym: Glutamate Carboxypeptidase II, Membrane Glutamate Carboxypeptidase, Mgcp, N- Acetylated-Alpha-Linked Acidic D I, Naaladase I, Pteroylpoly-Gamma-Glutamate Carboxypeptidas Folylpoly-Gamma- Glutamate Carboxypeptidase, Fgcp, Folate H 1, Prostate- Specific Membrane Antigen, Psma, Psm; Ec: 3.4.17.21 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Folh1, Folh, Naalad1, Psm, Psma Expression_system: Drosophila Melanogaster Expression_system_common: Fruit Fly Expression_system_taxid: 7227 Expression_system_strain: Schneider'S S2 Cells Expression_system_vector_type: Plasmid Expression_system_plasmid: Pmtbipv5-His
symmetry	Space Group: I 2 2 2	R_factor 0.206 R_Free 0.228
crystal cell	length a length b length c angle alpha angle beta angle gamma 101.759 130.128 158.874 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.64 Å
ligand	BMA, CA, CL, MAN, NAG, ZN	enzyme	Hydrolase E.C.3.4.17.21 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	A high-resolution structure of ligand-free human glutamate carboxypeptidase II., Barinka C, Starkova J, Konvalinka J, Lubkowski J, Acta Crystallograph Sect F Struct Biol Cryst Commun. 2007 Mar 1;63(Pt, 3):150-3. Epub 2007 Feb 13. PMID:17329803

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (137 Kb) [Save to disk] Biological Unit Coordinates (2oot.pdb1.gz) 258 Kb LPC: Ligand-Protein Contacts for 2OOT CSU: Contacts of Structural Units for 2OOT Likely Quarternary Molecular Structure file(s) for 2OOT Structure Factors (703 Kb) Retrieve 2OOT in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2OOT from S2C, [Save to disk] Re-refined 2oot structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2OOT in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2OOT

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2OOT, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2oot_A] [2oot] SWISS-PROT database: [Q04609] Domain organization of [FOLH1_HUMAN] by SWISSPFAM

Other resources with information on 2OOT

Community annotation for 2OOT at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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