2OPJ Lyase date Jan 29, 2007
title Crystal Structure Of O-Succinylbenzoate Synthase
authors R.Sugadev, S.K.Burley, S.Swaminathan, New York Sgx Research Cen Structural Genomics (Nysgxrc)
compound source
Molecule: O-Succinylbenzoate-Coa Synthase
Chain: A
Ec: 4.2.1.-
Engineered: Yes
Organism_scientific: Thermobifida Fusca
Organism_taxid: 269800
Strain: Yx
Gene: Tfu_1410
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Psgx3
symmetry Space Group: P 1
R_factor 0.202 R_Free 0.226
crystal
cell
length a length b length c angle alpha angle beta angle gamma
36.976 37.642 51.990 71.28 76.13 73.23
method X-Ray Diffractionresolution 1.60 Å
ligand MSE enzyme Lyase E.C.4.2.1 BRENDA
Gene TFU
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (52 Kb) [Save to disk]
  • Biological Unit Coordinates (2opj.pdb1.gz) 48 Kb
  • LPC: Ligand-Protein Contacts for 2OPJ
  • CSU: Contacts of Structural Units for 2OPJ
  • Likely Quarternary Molecular Structure file(s) for 2OPJ
  • Structure Factors (226 Kb)
  • Retrieve 2OPJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2OPJ from S2C, [Save to disk]
  • Re-refined 2opj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2OPJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2OPJ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2OPJ, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2opj_A] [2opj]
  • SWISS-PROT database: [Q47Q21]
  • Domain organization of [Q47Q21_THEFY] by SWISSPFAM
  • Domain found in 2OPJ: [MR_MLE ] by SMART
  • Other resources with information on 2OPJ
  • Community annotation for 2OPJ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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