2OPM	Transferase	date	Jan 29, 2007
title	Human Farnesyl Diphosphate Synthase Complexed With Bisphosph 461
authors	R.Cao, Y.G.Gao, H.Robinson, A.Goddard
compound		source
Molecule: Farnesyl Pyrophosphate Synthetase (Fpp Synthetase (Farnesyl Diphosphate Synthetase) [Includes: Dimethylallyltranstransferase (Ec 2.5.1.1); Geranyltranstra (Ec 2.5.1.10)]; Chain: A Ec: 2.5.1.10 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Fdps, Fps, Kiaa1293 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet11 Derivative
symmetry	Space Group: P 41 21 2	R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma 111.783 111.783 66.525 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.40 Å
ligand	MG, NI9, PO4	enzyme	Transferase E.C.2.5.1.1 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Lipophilic bisphosphonates as dual farnesyl/geranylgeranyl diphosphate synthase inhibitors: an X-ray and NMR investigation., Zhang Y, Cao R, Yin F, Hudock MP, Guo RT, Krysiak K, Mukherjee S, Gao YG, Robinson H, Song Y, No JH, Bergan K, Leon A, Cass L, Goddard A, Chang TK, Lin FY, Van Beek E, Papapoulos S, Wang AH, Kubo T, Ochi M, Mukkamala D, Oldfield E, J Am Chem Soc. 2009 Apr 15;131(14):5153-62. PMID:19309137

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (63 Kb) [Save to disk] Biological Unit Coordinates (2opm.pdb1.gz) 115 Kb LPC: Ligand-Protein Contacts for 2OPM CSU: Contacts of Structural Units for 2OPM Likely Quarternary Molecular Structure file(s) for 2OPM Structure Factors (123 Kb) Retrieve 2OPM in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2OPM from S2C, [Save to disk] Re-refined 2opm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2OPM in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2OPM

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2OPM, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2opm] [2opm_A] SWISS-PROT database: [P14324] Domain organization of [FPPS_HUMAN] by SWISSPFAM

Other resources with information on 2OPM

Community annotation for 2OPM at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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