2OQH Isomerase date Jan 31, 2007
title Crystal Structure Of An Isomerase From Streptomyces Coelicol
authors R.Agarwal, S.K.Burley, S.Swaminathan, New York Sgx Research Cen Structural Genomics (Nysgxrc)
compound source
Molecule: Putative Isomerase
Chain: A, B, C, D
Engineered: Yes
 Organism_scientific: Streptomyces Coelicolor A3(2)
Organism_taxid: 100226
Strain: A3(2), M145
Atcc: Baa-471
Gene: Sco7570, Sc5f1.24
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)Codon Plus Ril
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Psgx3(Bc)
symmetry Space Group: P 4
R_factor 0.205 R_Free 0.231
crystal
cell
length a length b length c angle alpha angle beta angle gamma
120.336 120.336 126.731 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.98 Å
ligand MSE, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (243 Kb) [Save to disk]
  • Biological Unit Coordinates (2oqh.pdb1.gz) 60 Kb
  • Biological Unit Coordinates (2oqh.pdb2.gz) 63 Kb
  • Biological Unit Coordinates (2oqh.pdb3.gz) 62 Kb
  • Biological Unit Coordinates (2oqh.pdb4.gz) 63 Kb
  • Biological Unit Coordinates (2oqh.pdb5.gz) 460 Kb
  • Biological Unit Coordinates (2oqh.pdb6.gz) 474 Kb
  • LPC: Ligand-Protein Contacts for 2OQH
  • CSU: Contacts of Structural Units for 2OQH
  • Likely Quarternary Molecular Structure file(s) for 2OQH
  • Structure Factors (920 Kb)
  • Retrieve 2OQH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2OQH from S2C, [Save to disk]
  • Re-refined 2oqh structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2OQH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2OQH
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2OQH, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2oqh] [2oqh_C] [2oqh_A] [2oqh_B] [2oqh_D]
  • SWISS-PROT database: [Q9F3A5]
  • Domain organization of [Q9F3A5_STRCO] by SWISSPFAM
  • Domain found in 2OQH: [MR_MLE ] by SMART
    • Other resources with information on 2OQH
  • Community annotation for 2OQH at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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