2OR8 Immune System date Feb 02, 2007
title Tim-1
authors C.Santiago, A.Ballesteros, G.G.Kaplan, J.M.Casasnovas
compound source
Molecule: Hepatitis A Virus Cellular Receptor 1 Homolog
Chain: A, B
Fragment: N-Terminal Cys-Rich Domain
Synonym: Havcr-1, T Cell Immunoglobulin And Mucin Domain-Co Protein 1, Timd-1, T Cell Membrane Protein 1, Tim-1;
Engineered: Yes
 Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Strain: Knowles Solter
Gene: Havcr1, Tim1, Timd1
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet-27b
symmetry Space Group: P 21 21 21
R_factor 0.232 R_Free 0.278
crystal
cell
length a length b length c angle alpha angle beta angle gamma
44.490 55.740 75.530 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.50 Å
ligand ACT enzyme
Primary referenceStructures of T Cell Immunoglobulin Mucin Receptors 1 and 2 Reveal Mechanisms for Regulation of Immune Responses by the TIM Receptor Family., Santiago C, Ballesteros A, Tami C, Martinez-Munoz L, Kaplan GG, Casasnovas JM, Immunity. 2007 Mar;26(3):299-310. PMID:17363299
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (43 Kb) [Save to disk]
  • Biological Unit Coordinates (2or8.pdb1.gz) 20 Kb
  • Biological Unit Coordinates (2or8.pdb2.gz) 20 Kb
  • LPC: Ligand-Protein Contacts for 2OR8
  • CSU: Contacts of Structural Units for 2OR8
  • Likely Quarternary Molecular Structure file(s) for 2OR8
  • Structure Factors (118 Kb)
  • Retrieve 2OR8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2OR8 from S2C, [Save to disk]
  • Re-refined 2or8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2OR8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2OR8
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2OR8, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2or8_B] [2or8] [2or8_A]
  • SWISS-PROT database: [Q5QNS5]
  • Domain organization of [TIMD1_MOUSE] by SWISSPFAM
  • Domain found in 2OR8: [IG ] by SMART
    • Other resources with information on 2OR8
  • Community annotation for 2OR8 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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