2ORO Oxidoreductase date Feb 04, 2007
title Murine Inducible Nitric Oxide Synthase Oxygenase Domain (Del (R)-1-(2-Imidazol-1-Yl-6-Methyl-Pyrimidin-4-Yl)-Pyrrolidine Carboxylic Acid (2-Benzo[1,3]Dioxol-5-Yl-Ethyl)-Amide Compl
authors M.Adler, M.Whitlow
compound source
Molecule: Nitric Oxide Synthase, Inducible
Chain: A
Fragment: Oxygenase Domain, Residues 114-498
Synonym: Nos Type II; Inducible No Synthase; Inducible Nos Macrophage Nos; Mac- Nos;
Ec: 1.14.13.39
Engineered: Yes
Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Gene: Nos2, Inosl
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Macrophage
Expression_system_plasmid: Pcwori
symmetry Space Group: P 21 21 21
R_factor 0.210 R_Free 0.244
crystal
cell
length a length b length c angle alpha angle beta angle gamma
63.378 73.329 93.866 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand 228, HEM, SO3 BindingDB enzyme Oxidoreductase E.C.1.14.13.39 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceDesign, synthesis, and activity of 2-imidazol-1-ylpyrimidine derived inducible nitric oxide synthase dimerization inhibitors., Davey DD, Adler M, Arnaiz D, Eagen K, Erickson S, Guilford W, Kenrick M, Morrissey MM, Ohlmeyer M, Pan G, Paradkar VM, Parkinson J, Polokoff M, Saionz K, Santos C, Subramanyam B, Vergona R, Wei RG, Whitlow M, Ye B, Zhao ZS, Devlin JJ, Phillips G, J Med Chem. 2007 Mar 22;50(6):1146-57. Epub 2007 Feb 23. PMID:17315988
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (65 Kb) [Save to disk]
  • Biological Unit Coordinates (2oro.pdb1.gz) 60 Kb
  • LPC: Ligand-Protein Contacts for 2ORO
  • CSU: Contacts of Structural Units for 2ORO
  • Likely Quarternary Molecular Structure file(s) for 2ORO
  • Structure Factors (176 Kb)
  • Retrieve 2ORO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2ORO from S2C, [Save to disk]
  • Re-refined 2oro structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2ORO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2ORO
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2ORO, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2oro] [2oro_A]
  • SWISS-PROT database: [P29477]
  • Domain organization of [NOS2_MOUSE] by SWISSPFAM
  • Other resources with information on 2ORO
  • Community annotation for 2ORO at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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