2ORY Hydrolase date Feb 05, 2007
title Crystal Structure Of M37 Lipase
authors S.K.Jung, D.G.Jeong, S.J.Kim
compound source
Molecule: Lipase
Chain: A, B
Ec: 3.1.1.3
Engineered: Yes
Organism_scientific: Photobacterium Sp. M37
Organism_taxid: 269172
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet22b
symmetry Space Group: P 21 21 21
R_factor 0.204 R_Free 0.240
crystal
cell
length a length b length c angle alpha angle beta angle gamma
70.694 95.102 99.700 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.20 Å
ligand
enzyme Hydrolase E.C.3.1.1.3 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructural basis for the cold adaptation of psychrophilic M37 lipase from Photobacterium lipolyticum., Jung SK, Jeong DG, Lee MS, Lee JK, Kim HK, Ryu SE, Park BC, Kim JH, Kim SJ, Proteins. 2008 Jan 10;. PMID:18186467
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (113 Kb) [Save to disk]
  • Biological Unit Coordinates (2ory.pdb1.gz) 55 Kb
  • Biological Unit Coordinates (2ory.pdb2.gz) 57 Kb
  • Biological Unit Coordinates (2ory.pdb3.gz) 109 Kb
  • CSU: Contacts of Structural Units for 2ORY
  • Likely Quarternary Molecular Structure file(s) for 2ORY
  • Structure Factors (280 Kb)
  • Retrieve 2ORY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2ORY from S2C, [Save to disk]
  • Re-refined 2ory structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2ORY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2ORY
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2ORY, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2ory_B] [2ory_A] [2ory]
  • SWISS-PROT database: [Q5DRN8]
  • Domain organization of [Q5DRN8_9GAMM] by SWISSPFAM
  • Other resources with information on 2ORY
  • Community annotation for 2ORY at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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