2OTD	Hydrolase	date	Feb 07, 2007
title	The Crystal Structure Of The Glycerophosphodiester Phosphodi From Shigella Flexneri 2a
authors	R.Zhang, R.Wu, S.Clancy, S.Jiang, A.Joachimiak, Midwest Center Fo Structural Genomics (Mcsg)
compound		source
Molecule: Glycerophosphodiester Phosphodiesterase Chain: A, B, C, D Ec: 3.1.4.1 Engineered: Yes		Organism_scientific: Shigella Flexneri Organism_taxid: 623 Strain: 2457t, 301 Atcc: 700930 Gene: Ugpq, Sf3466, S_4296 Expression_system: Escherichia Coli Bl21 Expression_system_taxid: 511693 Expression_system_strain: Bl21 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pdm68
symmetry	Space Group: P 21 21 21	R_factor 0.221 R_Free 0.276
crystal cell	length a length b length c angle alpha angle beta angle gamma 80.617 82.185 223.202 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.60 Å
ligand	MSE, PO4	enzyme	Hydrolase E.C.3.1.4.1 BRENDA
Gene	S
Gene Ontology	Chain Function Process Component A, D, C, B

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (164 Kb) [Save to disk] Biological Unit Coordinates (2otd.pdb1.gz) 42 Kb Biological Unit Coordinates (2otd.pdb2.gz) 41 Kb Biological Unit Coordinates (2otd.pdb3.gz) 42 Kb Biological Unit Coordinates (2otd.pdb4.gz) 41 Kb LPC: Ligand-Protein Contacts for 2OTD CSU: Contacts of Structural Units for 2OTD Likely Quarternary Molecular Structure file(s) for 2OTD Structure Factors (388 Kb) Retrieve 2OTD in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2OTD from S2C, [Save to disk] Re-refined 2otd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2OTD in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2OTD

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2OTD, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2otd] [2otd_A] [2otd_D] [2otd_B] [2otd_C] SWISS-PROT database: [Q83PU8] Domain organization of [Q83PU8_SHIFL] by SWISSPFAM

Other resources with information on 2OTD

Community annotation for 2OTD at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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