2OTM Crystal structure of a putative endoribonuclease (so_1960) from shewanella oneidensis mr-1 at 1.85 A resolution date
authors JCSG, Joint.Center.for.Structural.Genomics.
compound source
symmetry
R_factor
R_Free 0.177
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.85
ligand ACT, CA, GOL, MSE, NA enzyme
Gene NP ; SO
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (86 Kb) [Save to disk]
  • Biological Unit Coordinates (2otm.pdb1.gz) 78 Kb
  • LPC: Ligand-Protein Contacts for 2OTM
  • CSU: Contacts of Structural Units for 2OTM
  • Likely Quarternary Molecular Structure file(s) for 2OTM
  • Structure Factors (6133 Kb)
  • Retrieve 2OTM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2OTM from S2C, [Save to disk]
  • Re-refined 2otm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2OTM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2OTM
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2OTM, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2otm] [2otm_B] [2otm_C] [2otm_A]
  • SWISS-PROT database: [Q8EFL1]
  • Domain organization of [Q8EFL1_SHEON] by SWISSPFAM
  • Other resources with information on 2OTM
  • Community annotation for 2OTM at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science