2OUJ	Cell Adhesion	date	Feb 11, 2007
title	The Crystal Structure Of The Thrombospondin-1 N-Terminal Dom Complex With Fractionated Heparin Dp8
authors	K.Tan, A.Joachimiak, J.Wang, J.Lawler
compound		source
Molecule: Thrombospondin-1 Chain: A Fragment: N-Terminal Domain Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Thbs1, Tsp, Tsp1 Expression_system: Drosophila Melanogaster Expression_system_common: Fruit Fly Expression_system_taxid: 7227 Expression_system_strain: Drosophila S2 Cell Expression_system_vector_type: Plasmid Expression_system_plasmid: Pmtbipv5-His A
symmetry	Space Group: C 1 2 1	R_factor 0.253 R_Free 0.276
crystal cell	length a length b length c angle alpha angle beta angle gamma 95.497 42.059 52.965 90.00 91.88 90.00
method	X-Ray Diffraction	resolution	1.90 Å
Gene Ontology	Chain Function Process Component A
Primary reference	Heparin-induced cis- and trans-Dimerization Modes of the Thrombospondin-1 N-terminal Domain., Tan K, Duquette M, Liu JH, Shanmugasundaram K, Joachimiak A, Gallagher JT, Rigby AC, Wang JH, Lawler J, J Biol Chem. 2008 Feb 15;283(7):3932-41. Epub 2007 Dec 7. PMID:18065761

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (38 Kb) [Save to disk] Biological Unit Coordinates (2ouj.pdb1.gz) 65 Kb CSU: Contacts of Structural Units for 2OUJ Likely Quarternary Molecular Structure file(s) for 2OUJ Structure Factors (178 Kb) Retrieve 2OUJ in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2OUJ from S2C, [Save to disk] Re-refined 2ouj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2OUJ in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2OUJ

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2OUJ, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2ouj] [2ouj_A] SWISS-PROT database: [P07996] Domain organization of [TSP1_HUMAN] by SWISSPFAM Domain found in 2OUJ: [TSPN ] by SMART

Other resources with information on 2OUJ

Community annotation for 2OUJ at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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