2OVM	Transcription	date	Feb 14, 2007
title	Progesterone Receptor With Bound Asoprisnil And A Peptide Fr Repressor Ncor
authors	K.P.Madauss, S.J.Deng, S.A.Short, E.L.Stewart, S.P.Williams
compound		source
Molecule: Progesterone Receptor Chain: A Fragment: Ligand Binding Domain (Residues 678-933) Synonym: Pr Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Pgr, Nr3c3 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Phis Gst
Molecule: Ncor Chain: B Fragment: Residues 2251-2275 Engineered: Yes		Synthetic: Yes Other_details: Synthesized Peptide
symmetry	Space Group: P 32 2 1	R_factor 0.219 R_Free 0.244
crystal cell	length a length b length c angle alpha angle beta angle gamma 87.514 87.514 90.412 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.60 Å
ligand	AS0 BindingDB	enzyme
Primary reference	A structural and in vitro characterization of asoprisnil: a selective progesterone receptor modulator., Madauss KP, Grygielko ET, Deng SJ, Sulpizio AC, Stanley TB, Wu C, Short SA, Thompson SK, Stewart EL, Laping NJ, Williams SP, Bray JD, Mol Endocrinol. 2007 May;21(5):1066-81. Epub 2007 Mar 13. PMID:17356170

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (47 Kb) [Save to disk] Biological Unit Coordinates (2ovm.pdb1.gz) 42 Kb Biological Unit Coordinates (2ovm.pdb2.gz) 83 Kb LPC: Ligand-Protein Contacts for 2OVM CSU: Contacts of Structural Units for 2OVM Likely Quarternary Molecular Structure file(s) for 2OVM Structure Factors (108 Kb) Retrieve 2OVM in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2OVM from S2C, [Save to disk] Re-refined 2ovm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2OVM in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2OVM

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2OVM, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2ovm_A] [2ovm] [2ovm_B] SWISS-PROT database: [P06401] Domain organization of [PRGR_HUMAN] by SWISSPFAM Domain found in 2OVM: [HOLI ] by SMART

Other resources with information on 2OVM

Community annotation for 2OVM at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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