2OW0 Hydrolase date Feb 15, 2007
title Mmp-9 Active Site Mutant With Iodine-Labeled Carboxylate Inh
authors A.Tochowicz, W.Bode, K.Maskos, P.Goettig
compound source
Molecule: Matrix Metalloproteinase-9 (Mmp-9) (92 Kda Type I Collagenase) (92 Kda Gelatinase) (Gelatinase B) (Gelb);
Chain: A, B
Fragment: Catalytic Domain Residues: 110-215, 391-443
Ec: 3.4.24.35
Engineered: Yes
Mutation: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Mmp9, Clg4b
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 41 21 2
R_factor 0.227 R_Free 0.271
crystal
cell
length a length b length c angle alpha angle beta angle gamma
55.190 55.190 260.361 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand 6MR, CA, CL, ZN enzyme Hydrolase E.C.3.4.24.35 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceCrystal Structures of MMP-9 Complexes with Five Inhibitors: Contribution of the Flexible Arg424 Side-chain to Selectivity., Tochowicz A, Maskos K, Huber R, Oltenfreiter R, Dive V, Yiotakis A, Zanda M, Bode W, Goettig P, J Mol Biol. 2007 Aug 24;371(4):989-1006. Epub 2007 May 31. PMID:17599356
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (64 Kb) [Save to disk]
  • Biological Unit Coordinates (2ow0.pdb1.gz) 30 Kb
  • Biological Unit Coordinates (2ow0.pdb2.gz) 29 Kb
  • Biological Unit Coordinates (2ow0.pdb3.gz) 112 Kb
  • Biological Unit Coordinates (2ow0.pdb4.gz) 57 Kb
  • Biological Unit Coordinates (2ow0.pdb5.gz) 57 Kb
  • LPC: Ligand-Protein Contacts for 2OW0
  • CSU: Contacts of Structural Units for 2OW0
  • Likely Quarternary Molecular Structure file(s) for 2OW0
  • Structure Factors (204 Kb)
  • Retrieve 2OW0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2OW0 from S2C, [Save to disk]
  • Re-refined 2ow0 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2OW0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2OW0
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2OW0, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2ow0_B] [2ow0] [2ow0_A]
  • SWISS-PROT database: [P14780]
  • Domain organization of [MMP9_HUMAN] by SWISSPFAM
  • Domain found in 2OW0: [ZnMc ] by SMART
    • Other resources with information on 2OW0
  • Community annotation for 2OW0 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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