2OW7	Hydrolase	date	Feb 15, 2007
title	Golgi Alpha-Mannosidase II Complex With (1r,6s,7r,8s)-1- Thioniabicyclo[4.3.0]Nonan-7,8-Diol Chloride
authors	D.A.Kuntz
compound		source
Molecule: Alpha-Mannosidase 2 Chain: A Fragment: Catalytic Domain (Residues 76-1108) Synonym: Alpha-Mannosidase II Mannosyl- Oligosaccharide 1,3 Alpha-Mannosidase, Man II, Golgi Alpha- Mannosidase II, Ama Ec: 3.2.1.114 Engineered: Yes		Organism_scientific: Drosophila Melanogaster Organism_common: Fruit Fly Organism_taxid: 7227 Expression_system: Drosophila Melanogaster Expression_system_common: Fruit Fly Expression_system_taxid: 7227 Expression_system_strain: S2 Cells Expression_system_vector_type: Stable Transfection Plasmid Expression_system_plasmid: Pmtbip_nhis
symmetry	Space Group: P 21 21 21	R_factor 0.162 R_Free 0.203
crystal cell	length a length b length c angle alpha angle beta angle gamma 68.900 108.580 137.779 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.77 Å
ligand	MRD, NAG, NK2, SO4, ZN	enzyme	Hydrolase E.C.3.2.1.114 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Binding of sulfonium-ion analogues of di-epi-swainsonine and 8-epi-lentiginosine to Drosophila Golgi alpha-mannosidase II: The role of water in inhibitor binding., Kumar NS, Kuntz DA, Wen X, Pinto BM, Rose DR, Proteins. 2007 Dec 12;. PMID:18076078

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (194 Kb) [Save to disk] Biological Unit Coordinates (2ow7.pdb1.gz) 188 Kb LPC: Ligand-Protein Contacts for 2OW7 CSU: Contacts of Structural Units for 2OW7 Likely Quarternary Molecular Structure file(s) for 2OW7 Structure Factors (801 Kb) Retrieve 2OW7 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2OW7 from S2C, [Save to disk] Re-refined 2ow7 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2OW7 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2OW7

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2OW7, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2ow7] [2ow7_A] SWISS-PROT database: [Q24451] Domain organization of [MAN2_DROME] by SWISSPFAM Domain found in 2OW7: [Alpha-mann_mid ] by SMART

Other resources with information on 2OW7

Community annotation for 2OW7 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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