4V4I Crystal Structure of a 70S Ribosome-tRNA Complex Reveals Functional Interactions and Rearrangements. date
authors Korostelev, A., Trakhanov, S., Laurberg, M., Noller, H.F.
compound source
symmetry
R_factor
R_Free 0.353
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length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.71
note 4V4I supersedes 1VSA, 2OW8, 1VS9, 2I1C
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Primary referenceCrystal structure of a 70S ribosome-tRNA complex reveals functional interactions and rearrangements., Korostelev A, Trakhanov S, Laurberg M, Noller HF, Cell. 2006 Sep 22;126(6):1065-77. Epub 2006 Sep 7. PMID:16962654
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1705 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 4V4I
  • Structure Factors (4109 Kb)
  • Retrieve 4V4I in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4V4I from S2C, [Save to disk]
    • View 4V4I in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4V4I
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4v4i_F] [4v4i_f] [4v4i_o] [4v4i_H] [4v4i_p] [4v4i_Z] [4v4i_J] [4v4i_r] [4v4i_n] [4v4i_R] [4v4i_z] [4v4i_Y] [4v4i_K] [4v4i_m] [4v4i_l] [4v4i_q] [4v4i_I] [4v4i_y] [4v4i_S] [4v4i_b] [4v4i_s] [4v4i_W] [4v4i_T] [4v4i_v] [4v4i] [4v4i_Q] [4v4i_1] [4v4i_E] [4v4i_e] [4v4i_C] [4v4i_w] [4v4i_P] [4v4i_u] [4v4i_x] [4v4i_t] [4v4i_a] [4v4i_O] [4v4i_B] [4v4i_N] [4v4i_U] [4v4i_h] [4v4i_A] [4v4i_G] [4v4i_M] [4v4i_j] [4v4i_V] [4v4i_D] [4v4i_X] [4v4i_g] [4v4i_i] [4v4i_c] [4v4i_k] [4v4i_L] [4v4i_0] [4v4i_d]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4V4I: [KH] [KOW] [Ribosomal_L14] [Ribosomal_L2] [Ribosomal_L2_C] [Ribosomal_S10] [Ribosomal_S15] [Ribosomal_S4] [S4 ] by SMART
    • Other resources with information on 4V4I
  • Community annotation for 4V4I at PDBWiki (http://pdbwiki.org)

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