2OW9	Hydrolase	date	Feb 15, 2007
title	Crystal Structure Analysis Of The Mmp13 Catalytic Domain In With Specific Inhibitor
authors	A.G.Pavlovsky
compound		source
Molecule: Collagenase 3 Chain: A, B Fragment: Catalytic Domain Synonym: Matrix Metalloproteinase-13, Mmp-13 Ec: 3.4.24.- Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Tissue: Cartilage Gene: Mmp13 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3)Plyss Expression_system_vector_type: Plasmid Expression_system_plasmid: Pgemex1
symmetry	Space Group: C 1 2 1	R_factor 0.167 R_Free 0.191
crystal cell	length a length b length c angle alpha angle beta angle gamma 140.764 36.343 71.684 90.00 93.53 90.00
method	X-Ray Diffraction	resolution	1.74 Å
ligand	CA, HAE, SO4, SP6, ZN BindingDB	enzyme	Hydrolase E.C.3.4.24 BRENDA
Gene Ontology	Chain Function Process Component A, B
Primary reference	Discovery and characterization of a novel inhibitor of matrix metalloprotease-13 (MMP13) that reduces cartilage damage in vivo without joint fibroplasia side effects., Johnson AR, Pavlovsky AG, Ortwine DF, Prior F, Man CF, Bornemeier DA, Banotai CA, Mueller WT, McConnell P, Yan C, Baragi V, Lesch C, Roark WH, Wilson M, Datta K, Guzman R, Han HK, Dyer RD, J Biol Chem. 2007 Jul 10;. PMID:17623656

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (71 Kb) [Save to disk] Biological Unit Coordinates (2ow9.pdb1.gz) 34 Kb Biological Unit Coordinates (2ow9.pdb2.gz) 34 Kb Biological Unit Coordinates (2ow9.pdb3.gz) 126 Kb LPC: Ligand-Protein Contacts for 2OW9 CSU: Contacts of Structural Units for 2OW9 Likely Quarternary Molecular Structure file(s) for 2OW9 Structure Factors (280 Kb) Retrieve 2OW9 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2OW9 from S2C, [Save to disk] Re-refined 2ow9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2OW9 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2OW9

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2OW9, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2ow9_B] [2ow9] [2ow9_A] SWISS-PROT database: [P45452] Domain organization of [MMP13_HUMAN] by SWISSPFAM Domain found in 2OW9: [ZnMc ] by SMART

Other resources with information on 2OW9

Community annotation for 2OW9 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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