2OXL Gene Regulation date Feb 20, 2007
title Structure And Function Of The E. Coli Protein Ymgb: A Protei For Biofilm Formation And Acid Resistance
authors R.Page, W.Peti, T.K.Woods, J.M.Palermino, O.Doshi
compound source
Molecule: Hypothetical Protein Ymgb
Chain: A, B
Fragment: Ymgb C-Terminal Fragment
Engineered: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Gene: Ymgb
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21 (De3) Ril
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Rp-1b
symmetry Space Group: C 2 2 21
R_factor 0.215 R_Free 0.238
crystal
cell
length a length b length c angle alpha angle beta angle gamma
69.919 69.945 55.021 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand BOG, MSE enzyme
note 2OXL is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructure and function of the Escherichia coli protein YmgB: a protein critical for biofilm formation and acid-resistance., Lee J, Page R, Garcia-Contreras R, Palermino JM, Zhang XS, Doshi O, Wood TK, Peti W, J Mol Biol. 2007 Oct 12;373(1):11-26. Epub 2007 Aug 2. PMID:17765265
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (26 Kb) [Save to disk]
  • Biological Unit Coordinates (2oxl.pdb1.gz) 21 Kb
  • LPC: Ligand-Protein Contacts for 2OXL
  • CSU: Contacts of Structural Units for 2OXL
  • Likely Quarternary Molecular Structure file(s) for 2OXL
  • Structure Factors (1517 Kb)
  • Retrieve 2OXL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2OXL from S2C, [Save to disk]
  • Re-refined 2oxl structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2OXL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2OXL
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2OXL, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2oxl] [2oxl_A] [2oxl_B]
  • SWISS-PROT database: [P75993]
  • Domain organization of [ARIR_ECOLI] by SWISSPFAM
  • Other resources with information on 2OXL
  • Community annotation for 2OXL at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science