2OXT Viral Protein date Feb 21, 2007
title Crystal Structure Of Meaban Virus Nucleoside-2'-O-Methyltran
authors E.Mastrangelo, M.Milani, M.Bollati, M.Bolognesi
compound source
Molecule: Nucleoside-2'-O-Methyltransferase
Chain: A, B, C, D
Engineered: Yes
Other_details: Complex With S-Adenosyl-L-Methionine
 Organism_scientific: Meaban Virus
Organism_taxid: 35279
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 43
R_factor 0.231 R_Free 0.306
crystal
cell
length a length b length c angle alpha angle beta angle gamma
82.977 82.977 170.202 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.90 Å
ligand SAM enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceStructural bases for substrate recognition and activity in Meaban virus nucleoside-2'-O-methyltransferase., Mastrangelo E, Bollati M, Milani M, Selisko B, Peyrane F, Canard B, Grard G, De Lamballerie X, Bolognesi M, Protein Sci. 2007 May 1;. PMID:17473012
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (353 Kb) [Save to disk]
  • Biological Unit Coordinates (2oxt.pdb1.gz) 88 Kb
  • Biological Unit Coordinates (2oxt.pdb2.gz) 88 Kb
  • Biological Unit Coordinates (2oxt.pdb3.gz) 91 Kb
  • Biological Unit Coordinates (2oxt.pdb4.gz) 90 Kb
  • LPC: Ligand-Protein Contacts for 2OXT
  • CSU: Contacts of Structural Units for 2OXT
  • Likely Quarternary Molecular Structure file(s) for 2OXT
  • Structure Factors (1210 Kb)
  • Retrieve 2OXT in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2OXT from S2C, [Save to disk]
  • Re-refined 2oxt structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2OXT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2OXT
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2OXT, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2oxt_A] [2oxt_B] [2oxt_C] [2oxt] [2oxt_D]
  • SWISS-PROT database: [A0EKU1]
  • Domain organization of [A0EKU1_9FLAV] by SWISSPFAM
    • Other resources with information on 2OXT
  • Community annotation for 2OXT at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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