2OYC	Hydrolase	date	Feb 21, 2007
title	Crystal Structure Of Human Pyridoxal Phosphate Phosphatase
authors	U.A.Ramagopal, J.Freeman, M.Izuka, R.Toro, J.M.Sauder, S.K.Burley S.C.Almo, New York Sgx Research Center For Structural Genomi (Nysgxrc)
compound		source
Molecule: Pyridoxal Phosphate Phosphatase Chain: A Synonym: Plp Phosphatase Ec: 3.1.3.74 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Pdxp, Plp, Plpp Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Bc-Psgx3(Bc)
symmetry	Space Group: P 43 21 2	R_factor 0.192 R_Free 0.223
crystal cell	length a length b length c angle alpha angle beta angle gamma 54.329 54.329 213.200 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.72 Å
ligand	MSE, NA, WO4	enzyme	Hydrolase E.C.3.1.3.74 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Structural genomics of protein phosphatases., Almo SC, Bonanno JB, Sauder JM, Emtage S, Dilorenzo TP, Malashkevich V, Wasserman SR, Swaminathan S, Eswaramoorthy S, Agarwal R, Kumaran D, Madegowda M, Ragumani S, Patskovsky Y, Alvarado J, Ramagopal UA, Faber-Barata J, Chance MR, Sali A, Fiser A, Zhang ZY, Lawrence DS, Burley SK, J Struct Funct Genomics. 2007 Sep;8(2-3):121-40. Epub 2007 Dec 5. PMID:18058037

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (56 Kb) [Save to disk] Biological Unit Coordinates (2oyc.pdb1.gz) 100 Kb LPC: Ligand-Protein Contacts for 2OYC CSU: Contacts of Structural Units for 2OYC Likely Quarternary Molecular Structure file(s) for 2OYC Structure Factors (246 Kb) Retrieve 2OYC in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2OYC from S2C, [Save to disk] Re-refined 2oyc structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2OYC in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2OYC

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2OYC, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2oyc] [2oyc_A] SWISS-PROT database: [Q96GD0] Domain organization of [PLPP_HUMAN] by SWISSPFAM

Other resources with information on 2OYC

Community annotation for 2OYC at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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