2OZ3	Lyase	date	Feb 23, 2007
title	Crystal Structure Of L-Rhamnonate Dehydratase From Azotobact Vinelandii
authors	Y.Patskovsky, R.Toro, J.M.Sauder, J.C.Freeman, K.Bain, T.Gheyi, B. S.R.Wasserman, D.Smith, J.Gerlt, S.K.Burley, S.C.Almo, New York Research Center For Structural Genomics (Nysgxrc)
compound		source
Molecule: Mandelate Racemasemuconate Lactonizing Enzyme Chain: A, B, C, D, E, F, G, H Fragment: Residues 238-630 Ec: 4.2.1.90 Engineered: Yes		Organism_scientific: Azotobacter Vinelandii Avop Organism_taxid: 322710 Strain: Avop Gene: Avin02004392, Avindraft_6446 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_vector: Pet Expression_system_plasmid: Bc-Psgx3(Bc)
symmetry	Space Group: C 1 2 1	R_factor 0.196 R_Free 0.257
crystal cell	length a length b length c angle alpha angle beta angle gamma 170.772 115.397 164.113 90.00 96.06 90.00
method	X-Ray Diffraction	resolution	2.00 Å
ligand	GOL, MSE, NA	enzyme	Lyase E.C.4.2.1.90 BRENDA
Gene	AVINDRAFT
Gene Ontology	Chain Function Process Component F, A, E, B, H, C, D, G

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (543 Kb) [Save to disk] Biological Unit Coordinates (2oz3.pdb1.gz) 534 Kb Biological Unit Coordinates (2oz3.pdb2.gz) 265 Kb Biological Unit Coordinates (2oz3.pdb3.gz) 521 Kb LPC: Ligand-Protein Contacts for 2OZ3 CSU: Contacts of Structural Units for 2OZ3 Likely Quarternary Molecular Structure file(s) for 2OZ3 Structure Factors (1746 Kb) Retrieve 2OZ3 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2OZ3 from S2C, [Save to disk] Re-refined 2oz3 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2OZ3 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2OZ3

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2OZ3, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2oz3_F] [2oz3_A] [2oz3_E] [2oz3_G] [2oz3_D] [2oz3_B] [2oz3_C] [2oz3_H] [2oz3] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 2OZ3: [MR_MLE ] by SMART

Other resources with information on 2OZ3

Community annotation for 2OZ3 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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