2OZ6 Dna Binding Protein date Feb 24, 2007
title Crystal Structure Of Virulence Factor Regulator From Pseudom Aeruginosa In Complex With Camp
authors T.J.Cordes, A.R.Bright, K.T.Forest
compound source
Molecule: Virulence Factor Regulator
Chain: A
Engineered: Yes
 Organism_scientific: Pseudomonas Aeruginosa
Organism_taxid: 287
Strain: Pak
Gene: Vfr
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3) Delta Crp
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet15b
symmetry Space Group: I 41
R_factor 0.190 R_Free 0.251
crystal
cell
length a length b length c angle alpha angle beta angle gamma
69.950 69.950 147.490 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.80 Å
ligand CMP enzyme
Gene
Ontology
ChainFunctionProcessComponent
A
  • bacterial-type RNA polymeras...


    • Primary referenceCrystal Structure of Pseudomonas aeruginosa Virulence Factor Regulator., Cordes TJ, Worzalla GA, Ginster AM, Forest KT, J Bacteriol. 2011 Jun 10. PMID:21665969
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (38 Kb) [Save to disk]
  • Biological Unit Coordinates (2oz6.pdb1.gz) 66 Kb
  • LPC: Ligand-Protein Contacts for 2OZ6
  • CSU: Contacts of Structural Units for 2OZ6
  • Likely Quarternary Molecular Structure file(s) for 2OZ6
  • Structure Factors (70 Kb)
  • Retrieve 2OZ6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2OZ6 from S2C, [Save to disk]
  • Re-refined 2oz6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2OZ6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2OZ6
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2OZ6, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2oz6] [2oz6_A]
  • SWISS-PROT database: [P55222]
  • Domain organization of [VFR_PSEAE] by SWISSPFAM
  • Domains found in 2OZ6: [HTH_CRP] [cNMP ] by SMART
    • Other resources with information on 2OZ6
  • Community annotation for 2OZ6 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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