2OZA Signaling Protein Transferase date Feb 25, 2007
title Structure Of P38alpha Complex
authors A.White, C.A.Pargellis, J.M.Studts, B.G.Werneburg, B.T.Farmer Ii
compound source
Molecule: Map Kinase-Activated Protein Kinase 2
Chain: A
Fragment: Mk2
Synonym: Mapk-Activated Protein Kinase 2; Mapkap Kinase 2 Mk2;
Ec: 2.7.11.1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Mapkapk2
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet16b

Molecule: Mitogen-Activated Protein Kinase 14
Chain: B
Fragment: P38a
Synonym: Mitogen-Activated Protein Kinase P38 Alpha; Map Ki Alpha; Crk1;
Ec: 2.7.11.24
Engineered: Yes

Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Gene: Mapk14, Crk1, Csbp1, Csbp2
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet3a
symmetry Space Group: P 41 21 2
R_factor 0.239 R_Free 0.296
crystal
cell
length a length b length c angle alpha angle beta angle gamma
83.310 83.310 231.490 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.70 Å
ligand
enzyme Transferase E.C.2.7.11.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


B


Primary referenceMolecular basis of MAPK-activated protein kinase 2:p38 assembly., White A, Pargellis CA, Studts JM, Werneburg BG, Farmer BT 2nd, Proc Natl Acad Sci U S A. 2007 Apr 10;104(15):6353-8. Epub 2007 Mar 29. PMID:17395714
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (116 Kb) [Save to disk]
  • Biological Unit Coordinates (2oza.pdb1.gz) 111 Kb
  • CSU: Contacts of Structural Units for 2OZA
  • Likely Quarternary Molecular Structure file(s) for 2OZA
  • Structure Factors (201 Kb)
  • Retrieve 2OZA in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2OZA from S2C, [Save to disk]
  • Re-refined 2oza structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2OZA in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2OZA
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2OZA, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2oza] [2oza_B] [2oza_A]
  • SWISS-PROT database: [P49137] [P47811]
  • Domain organization of [MAPK2_HUMAN] [MK14_MOUSE] by SWISSPFAM
  • Domain found in 2OZA: [S_TKc ] by SMART
  • Other resources with information on 2OZA
  • Community annotation for 2OZA at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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