2OZT Lyase date Feb 27, 2007
title Crystal Structure Of O-Succinylbenzoate Synthase From Thermosynechococcus Elongatus Bp-1
authors V.N.Malashkevich, J.Bonanno, R.Toro, J.M.Sauder, K.D.Schwinn, K.T J.M.Adams, C.Reyes, I.Rooney, T.Gheyi, S.R.Wasserman, S.Emtage, S.K.Burley, S.C.Almo, New York Sgx Research Center For Struct Genomics (Nysgxrc)
compound source
Molecule: Tlr1174 Protein
Chain: A
Engineered: Yes
Organism_scientific: Synechococcus Elongatus
Organism_taxid: 32046
Strain: Bp-1
Gene: Tlr1174
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Bc-Psgx3(Bc)
symmetry Space Group: C 2 2 21
R_factor 0.178 R_Free 0.207
crystal
cell
length a length b length c angle alpha angle beta angle gamma
39.641 113.498 148.155 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.42 Å
ligand MSE, NA, PO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceLoss of quaternary structure is associated with rapid sequence divergence in the OSBS family., Odokonyero D, Sakai A, Patskovsky Y, Malashkevich VN, Fedorov AA, Bonanno JB, Fedorov EV, Toro R, Agarwal R, Wang C, Ozerova ND, Yew WS, Sauder JM, Swaminathan S, Burley SK, Almo SC, Glasner ME, Proc Natl Acad Sci U S A. 2014 May 28. pii: 201318703. PMID:24872444
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (65 Kb) [Save to disk]
  • Biological Unit Coordinates (2ozt.pdb1.gz) 59 Kb
  • LPC: Ligand-Protein Contacts for 2OZT
  • CSU: Contacts of Structural Units for 2OZT
  • Likely Quarternary Molecular Structure file(s) for 2OZT
  • Structure Factors (1118 Kb)
  • Retrieve 2OZT in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2OZT from S2C, [Save to disk]
  • Re-refined 2ozt structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2OZT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2OZT
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2OZT, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2ozt_A] [2ozt]
  • SWISS-PROT database: [Q8DJP8]
  • Domain organization of [Q8DJP8_THEEB] by SWISSPFAM
  • Domain found in 2OZT: [MR_MLE ] by SMART
  • Other resources with information on 2OZT
  • Community annotation for 2OZT at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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