2P24	Immune System	date	Mar 06, 2007
title	I-Aumbp125-135
authors	C.Mcbeth, R.K.Strong
compound		source
Molecule: H-2 Class II Histocompatibility Antigen, A-U Alph Chain: A Engineered: Yes		Organism_scientific: Mus Musculus Organism_common: House Mouse Organism_taxid: 10090 Gene: H2-Aa Expression_system: Drosophila Melanogaster Expression_system_common: Fruit Fly Expression_system_taxid: 7227 Expression_system_strain: S2 Expression_system_vector_type: Plasmid Expression_system_plasmid: Prmha3
Molecule: H-2 Class II Histocompatibility Antigen, A-U Beta Chain: B Engineered: Yes		Organism_scientific: Mus Musculus Organism_common: House Mouse Organism_taxid: 10090 Gene: I-Au Expression_system: Drosophila Melanogaster Expression_system_common: Fruit Fly Expression_system_taxid: 7227 Expression_system_strain: S2 Expression_system_vector_type: Plasmid Expression_system_plasmid: Prmha3
symmetry	Space Group: P 41 21 2	R_factor 0.209 R_Free 0.260
crystal cell	length a length b length c angle alpha angle beta angle gamma 103.656 103.656 97.246 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.15 Å
Gene Ontology	Chain Function Process Component A B
Primary reference	A new twist in TCR diversity revealed by a forbidden alphabeta TCR., McBeth C, Seamons A, Pizarro JC, Fleishman SJ, Baker D, Kortemme T, Goverman JM, Strong RK, J Mol Biol. 2008 Feb 1;375(5):1306-19. Epub 2007 Nov 17. PMID:18155234

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (71 Kb) [Save to disk] Biological Unit Coordinates (2p24.pdb1.gz) 64 Kb CSU: Contacts of Structural Units for 2P24 Likely Quarternary Molecular Structure file(s) for 2P24 Structure Factors (440 Kb) Retrieve 2P24 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2P24 from S2C, [Save to disk] Re-refined 2p24 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2P24 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2P24

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2P24, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2p24_A] [2p24] [2p24_B] SWISS-PROT database: [P01910] [P06344] Domain organization of [HA2K_MOUSE] [HB2U_MOUSE] by SWISSPFAM Domains found in 2P24: [IGc1] [MHC_II_alpha] [MHC_II_beta ] by SMART

Other resources with information on 2P24

Community annotation for 2P24 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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