2P3F Hydrolase date Mar 08, 2007
title Crystal Structure Of The Factor Xanap5 Complex
authors J.L.Rios-Steiner, M.T.Murakami, A.Tulinsky, R.K.Arni
compound source
Molecule: Coagulation Factor X
Chain: H
Fragment: Activated Factor Xa Heavy Chain Domain
Synonym: Stuart Factor, Stuart-Prower Factor
Ec: 3.4.21.6
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Coagulation Factor X
Chain: L
Fragment: Egf-Like 2 Domain
Synonym: Stuart Factor, Stuart-Prower Factor
Ec: 3.4.21.6

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Anti-Coagulant Protein 5
Chain: N

Organism_scientific: Ancylostoma Caninum
Organism_common: Dog Hookworm
Organism_taxid: 29170
symmetry Space Group: P 61 2 2
R_factor 0.180 R_Free 0.280
crystal
cell
length a length b length c angle alpha angle beta angle gamma
137.170 137.170 167.670 90.00 90.00 120.00
method X-Ray Diffractionresolution 3.10 Å
ligand NA enzyme Hydrolase E.C.3.4.21.6 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
H


N
  • serine-type endopeptidase in...


  • Primary referenceActive and exo-site inhibition of human factor Xa: structure of des-Gla factor Xa inhibited by NAP5, a potent nematode anticoagulant protein from Ancylostoma caninum., Rios-Steiner JL, Murakami MT, Tulinsky A, Arni RK, J Mol Biol. 2007 Aug 17;371(3):774-86. Epub 2007 May 18. PMID:17588602
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (64 Kb) [Save to disk]
  • Biological Unit Coordinates (2p3f.pdb1.gz) 59 Kb
  • LPC: Ligand-Protein Contacts for 2P3F
  • CSU: Contacts of Structural Units for 2P3F
  • Likely Quarternary Molecular Structure file(s) for 2P3F
  • Retrieve 2P3F in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2P3F from S2C, [Save to disk]
  • View 2P3F in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2P3F
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2P3F, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2p3f_H] [2p3f_N] [2p3f] [2p3f_L]
  • SWISS-PROT database: [P00742] [Q16940]
  • Domain organization of [FA10_HUMAN] [Q16940_ANCCA] by SWISSPFAM
  • Domains found in 2P3F: [EGF] [Tryp_SPc ] by SMART
  • Other resources with information on 2P3F
  • Community annotation for 2P3F at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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