2P4Y	Transcription	date	Mar 13, 2007
title	Crystal Structure Of Human Ppar-Gamma-Ligand Binding Domain With An Indole-Based Modulator
authors	B.M.Mckeever
compound		source
Molecule: Peroxisome Proliferator-Activated Receptor Gamma Chain: A, B Fragment: Ligand-Binding Domain (Lbd), Residues 231-505 Synonym: Ppar-Gamma Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Pparg, Nr1c3 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pgex4t2
symmetry	Space Group: C 1 2 1	R_factor 0.232 R_Free 0.274
crystal cell	length a length b length c angle alpha angle beta angle gamma 92.148 59.859 118.287 90.00 103.76 90.00
method	X-Ray Diffraction	resolution	2.25 Å
ligand	C03, TRS	enzyme
Gene Ontology	Chain Function Process Component A, B
Primary reference	The differential interactions of peroxisome proliferator-activated receptor gamma ligands with Tyr473 is a physical basis for their unique biological activities., Einstein M, Akiyama TE, Castriota GA, Wang CF, McKeever B, Mosley RT, Becker JW, Moller DE, Meinke PT, Wood HB, Berger JP, Mol Pharmacol. 2008 Jan;73(1):62-74. Epub 2007 Oct 16. PMID:17940191

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (85 Kb) [Save to disk] Biological Unit Coordinates (2p4y.pdb1.gz) 80 Kb LPC: Ligand-Protein Contacts for 2P4Y CSU: Contacts of Structural Units for 2P4Y Likely Quarternary Molecular Structure file(s) for 2P4Y Structure Factors (246 Kb) Retrieve 2P4Y in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2P4Y from S2C, [Save to disk] Re-refined 2p4y structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2P4Y in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2P4Y

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2P4Y, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2p4y_A] [2p4y_B] [2p4y] SWISS-PROT database: [P37231] Domain organization of [PPARG_HUMAN] by SWISSPFAM Domain found in 2P4Y: [HOLI ] by SMART

Other resources with information on 2P4Y

Community annotation for 2P4Y at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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