2P6T Transcription date Mar 19, 2007
title Crystal Structure Of Transcriptional Regulator Nmb0573 And L Complex From Neisseria Meningitidis
authors J.Ren, S.Sainsbury, R.J.Owens, Oxford Protein Production Facili
compound source
Molecule: Transcriptional Regulator, Lrpasnc Family
Chain: A, B, C, D, E, F, G, H
Engineered: Yes
 Organism_scientific: Neisseria Meningitidis
Organism_taxid: 122586
Strain: Mc58
Gene: Nmb0573
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: B834(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Oppf2146
symmetry Space Group: P 1 21 1
R_factor 0.235 R_Free 0.300
crystal
cell
length a length b length c angle alpha angle beta angle gamma
65.389 149.771 77.845 90.00 105.68 90.00
method X-Ray Diffractionresolution 2.90 Å
ligand CA, GOL, LEU, MSE enzyme
Gene
Ontology
ChainFunctionProcessComponent
F, A, E, B, H, C, D, G


Primary referenceThe structure and transcriptional analysis of a global regulator from neisseria meningitidis., Ren J, Sainsbury S, Combs SE, Capper RG, Jordan PW, Berrow NS, Stammers DK, Saunders NJ, Owens RJ, J Biol Chem. 2007 Mar 20;. PMID:17374605
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (210 Kb) [Save to disk]
  • Biological Unit Coordinates (2p6t.pdb1.gz) 203 Kb
  • LPC: Ligand-Protein Contacts for 2P6T
  • CSU: Contacts of Structural Units for 2P6T
  • Likely Quarternary Molecular Structure file(s) for 2P6T
  • Structure Factors (270 Kb)
  • Retrieve 2P6T in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2P6T from S2C, [Save to disk]
  • Re-refined 2p6t structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2P6T in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2P6T
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2P6T, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2p6t_G] [2p6t_D] [2p6t_C] [2p6t_F] [2p6t_A] [2p6t_H] [2p6t_B] [2p6t_E] [2p6t]
  • SWISS-PROT database: [Q9K0L9]
  • Domain organization of [Q9K0L9_NEIMB] by SWISSPFAM
  • Domain found in 2P6T: [HTH_ASNC ] by SMART
    • Other resources with information on 2P6T
  • Community annotation for 2P6T at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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