2P6Y Structural Genomics, Unknown Function date Mar 19, 2007
title X-Ray Structure Of The Protein Q9km02_vibch From Vibrio Chol The Resolution 1.63 A. Northeast Structural Genomics Consor Target Vcr80.
authors A.P.Kuzin, M.Abashidze, S.Jayaraman, C.X.Chen, C.Wang, Y.Fang, K.Cunningham, L.Owens, R.Xiao, J.Liu, M.C.Baran, T.B.Acton, B.Ros G.T.Montelione, L.Tong, J.Hunt, Northeast Structural Genomics Consortium (Nesg)
compound source
Molecule: Hypothetical Protein Vca0587
Chain: A
Engineered: Yes
 Organism_scientific: Vibrio Cholerae
Organism_taxid: 666
Strain: El Tor Inaba N16961
Atcc: 39315
Gene: Vca0587
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: F 4 3 2
R_factor 0.207 R_Free 0.223
crystal
cell
length a length b length c angle alpha angle beta angle gamma
172.924 172.924 172.924 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.63 Å
ligand MSE, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (31 Kb) [Save to disk]
  • Biological Unit Coordinates (2p6y.pdb1.gz) 70 Kb
  • Biological Unit Coordinates (2p6y.pdb2.gz) 552 Kb
  • LPC: Ligand-Protein Contacts for 2P6Y
  • CSU: Contacts of Structural Units for 2P6Y
  • Likely Quarternary Molecular Structure file(s) for 2P6Y
  • Structure Factors (564 Kb)
  • Retrieve 2P6Y in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2P6Y from S2C, [Save to disk]
  • Re-refined 2p6y structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2P6Y in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2P6Y
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2P6Y, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2p6y_A] [2p6y]
  • SWISS-PROT database: [Q9KM02]
  • Domain organization of [Q9KM02_VIBCH] by SWISSPFAM
    • Other resources with information on 2P6Y
  • Community annotation for 2P6Y at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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