2P8H Hydrolase date Mar 22, 2007
title Crystal Structure Of Human Beta Secretase Complexed With Inh
authors S.Munshi
compound source
Molecule: Beta-Secretase 1
Chain: A
Fragment: Protease Domain (Residues 43-446)
Synonym: Beta-Site App Cleaving Enzyme 1, Beta-Site Amyloid Membrane-Associated Aspartic Protease 2, Memapsin-2, Aspart Protease 2, Asp 2, Asp2;
Ec: 3.4.23.46
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Bace1, Bace
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet11a
symmetry Space Group: C 2 2 21
R_factor 0.221 R_Free 0.249
crystal
cell
length a length b length c angle alpha angle beta angle gamma
104.569 127.291 76.085 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand MY9 enzyme Hydrolase E.C.3.4.23.46 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceDesign and Synthesis of 2,3,5-Substituted Imidazolidin-4-one Inhibitors of BACE-1., Barrow JC, Rittle KE, Ngo PL, Selnick HG, Graham SL, Pitzenberger SM, McGaughey GB, Colussi D, Lai MT, Huang Q, Tugusheva K, Espeseth AS, Simon AJ, Munshi SK, Vacca JP, ChemMedChem. 2007 Jul 9;2(7):995-999. PMID:17458843
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (71 Kb) [Save to disk]
  • Biological Unit Coordinates (2p8h.pdb1.gz) 66 Kb
  • LPC: Ligand-Protein Contacts for 2P8H
  • CSU: Contacts of Structural Units for 2P8H
  • Likely Quarternary Molecular Structure file(s) for 2P8H
  • Retrieve 2P8H in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2P8H from S2C, [Save to disk]
  • View 2P8H in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2P8H
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2P8H, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2p8h_A] [2p8h]
  • SWISS-PROT database: [P56817]
  • Belongs to the β-amyloid cleaving enzyme (bace1) family according to TCDB.
  • Domain organization of [BACE1_HUMAN] by SWISSPFAM
  • Other resources with information on 2P8H
  • Community annotation for 2P8H at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science