2P8Z Translation date Mar 23, 2007
title Fitted Structure Of Adpr-Eef2 In The 80s:Adpr-Eef2:Gdpnp:Sor Cryo-Em Reconstruction
authors D.J.Taylor, J.Nilsson, A.R.Merrill, G.R.Andersen, P.Nissen, J.Fra
compound source
Molecule: Elongation Factor 2
Chain: T
Synonym: Ef-2, Translation Elongation Factor 2, Eukaryotic Factor 2, Eef2, Ribosomal Translocase;
 Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932

Molecule: Elongation Factor Tu-B
Chain: S
Fragment: Switch 1 Loop
Synonym: Ef-Tu-B
Organism_scientific: Thermus Thermophilus
Organism_taxid: 274
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 8.90 Å
ligand APR, DDE, GNP, SO1 enzyme
Gene
Ontology
ChainFunctionProcessComponent
T


Primary referenceStructures of modified eEF2.80S ribosome complexes reveal the role of GTP hydrolysis in translocation., Taylor DJ, Nilsson J, Merrill AR, Andersen GR, Nissen P, Frank J, EMBO J. 2007 May 2;26(9):2421-31. Epub 2007 Apr 19. PMID:17446867
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (125 Kb) [Save to disk]
  • Biological Unit Coordinates (2p8z.pdb1.gz) 119 Kb
  • LPC: Ligand-Protein Contacts for 2P8Z
  • CSU: Contacts of Structural Units for 2P8Z
  • Likely Quarternary Molecular Structure file(s) for 2P8Z
  • Retrieve 2P8Z in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2P8Z from S2C, [Save to disk]
    • View 2P8Z in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2P8Z
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2P8Z, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2p8z_S] [2p8z_T] [2p8z]
  • SWISS-PROT database: [P32324] [P60339]
  • Domain organization of [EF2_YEAST] [EFTU2_THET8] by SWISSPFAM
  • Domains found in 2P8Z: [EFG_C] [EFG_IV ] by SMART
    • Other resources with information on 2P8Z
  • Community annotation for 2P8Z at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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