2P95 Hydrolase date Mar 23, 2007
title Factor Xa In Complex With The Inhibitor 5-Chloro-N-((1r,2s)- Oxopyridin-1(2h)-Yl)Benzamido) Cyclopentyl)Thiophene-2-Carb
authors C.H.Chang
compound source
Molecule: Factor Xa
Chain: A
Fragment: Residues 16-244
Synonym: Factor Xa Heavy Chain, Activated Factor Xa Heavy C
Ec: 3.4.21.6
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Other_details: Proteolytic Cleavage Product

Molecule: Factor Xa
Chain: L
Fragment: Residues 87-138
Synonym: Factor Xa Light Chain
Ec: 3.4.21.6

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 21 21 21
R_factor 0.239 R_Free 0.271
crystal
cell
length a length b length c angle alpha angle beta angle gamma
57.600 72.300 78.900 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.20 Å
ligand ME5 BindingDB enzyme Hydrolase E.C.3.4.21.6 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSAR and X-ray structures of enantiopure 1,2-cis-(1R,2S)-cyclopentyldiamine and cyclohexyldiamine derivatives as inhibitors of coagulation Factor Xa., Qiao JX, Chang CH, Cheney DL, Morin PE, Wang GZ, King SR, Wang TC, Rendina AR, Luettgen JM, Knabb RM, Wexler RR, Lam PY, Bioorg Med Chem Lett. 2007 Aug 15;17(16):4419-27. Epub 2007 Jun 10. PMID:17588746
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (53 Kb) [Save to disk]
  • Biological Unit Coordinates (2p95.pdb1.gz) 49 Kb
  • LPC: Ligand-Protein Contacts for 2P95
  • CSU: Contacts of Structural Units for 2P95
  • Likely Quarternary Molecular Structure file(s) for 2P95
  • Structure Factors (228 Kb)
  • Retrieve 2P95 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2P95 from S2C, [Save to disk]
  • Re-refined 2p95 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2P95 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2P95
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2P95, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2p95_L] [2p95_A] [2p95]
  • SWISS-PROT database: [P00742]
  • Domain organization of [FA10_HUMAN] by SWISSPFAM
  • Domains found in 2P95: [EGF] [Tryp_SPc ] by SMART
  • Other resources with information on 2P95
  • Community annotation for 2P95 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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