2PCL Hydrolase date Mar 30, 2007
title Crystal Structure Of Abc Transporter With Complex (Aq_297) F Aquifex Aeolicus Vf5
authors J.Jeyakanthan, S.P.Kanaujia, Z.A.Rafi, K.Sekar, A.Ebihara, N.Naka S.Kuramitsu, A.Shinkai, Y.Shiro, S.Yokoyama, Riken Structural Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Lipoprotein-Releasing System Atp-Binding Protein
Chain: A
Synonym: Abc Transporter
Ec: 3.6.3.-
Engineered: Yes
Organism_scientific: Aquifex Aeolicus
Organism_taxid: 224324
Strain: Vf5
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl-21 Condon Plus (De3)-Ril
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet21a
symmetry Space Group: H 3 2
R_factor 0.201 R_Free 0.247
crystal
cell
length a length b length c angle alpha angle beta angle gamma
104.177 104.177 135.046 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.70 Å
ligand EDO, MG, SO4 enzyme Hydrolase E.C.3.6.3 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (48 Kb) [Save to disk]
  • Biological Unit Coordinates (2pcl.pdb1.gz) 84 Kb
  • Biological Unit Coordinates (2pcl.pdb2.gz) 249 Kb
  • LPC: Ligand-Protein Contacts for 2PCL
  • CSU: Contacts of Structural Units for 2PCL
  • Likely Quarternary Molecular Structure file(s) for 2PCL
  • Structure Factors (474 Kb)
  • Retrieve 2PCL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2PCL from S2C, [Save to disk]
  • Re-refined 2pcl structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2PCL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2PCL
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2PCL, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2pcl_A] [2pcl]
  • SWISS-PROT database: [O66646]
  • Domain organization of [LOLD_AQUAE] by SWISSPFAM
  • Domain found in 2PCL: [AAA ] by SMART
  • Other resources with information on 2PCL
  • Community annotation for 2PCL at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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