2PE2	Transferase	date	Apr 01, 2007
title	Crystal Structure Of Human Phosphoinositide-Dependent Protei (Pdk1) 3-{5-[2-Oxo-5-Ureido-1,2-Dihydro-Indol-(3z)-Ylidenem Pyrrol-3-Yl}-N-(2-Piperidin-1-Yl-Ethyl)-Benzamide Complex
authors	M.Whitlow, M.Adler
compound		source
Molecule: 3-Phosphoinositide-Dependent Protein Kinase 1 Chain: A Fragment: Kinase Domain Synonym: Hpdk1 Ec: 2.7.11.1 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Pdpk1, Pdk1 Expression_system: Unidentified Baculovirus Expression_system_taxid: 10469 Expression_system_strain: Sf-21 Cells Expression_system_vector_type: Pbluebac4.5 Expression_system_plasmid: Pdk1-Catpbb4.5
symmetry	Space Group: P 32 2 1	R_factor 0.188 R_Free 0.215
crystal cell	length a length b length c angle alpha angle beta angle gamma 123.223 123.223 47.386 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.13 Å
ligand	464, GOL, SEP, SO4 BindingDB	enzyme	Transferase E.C.2.7.11.1 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Indolinone based phosphoinositide-dependent kinase-1 (PDK1) inhibitors. Part 2: Optimization of BX-517., Islam I, Brown G, Bryant J, Hrvatin P, Kochanny MJ, Phillips GB, Yuan S, Adler M, Whitlow M, Lentz D, Polokoff MA, Wu J, Shen J, Walters J, Ho E, Subramanyam B, Zhu D, Feldman RI, Arnaiz DO, Bioorg Med Chem Lett. 2007 May 23;. PMID:17544272

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (58 Kb) [Save to disk] Biological Unit Coordinates (2pe2.pdb1.gz) 53 Kb Biological Unit Coordinates (2pe2.pdb2.gz) 102 Kb LPC: Ligand-Protein Contacts for 2PE2 CSU: Contacts of Structural Units for 2PE2 Likely Quarternary Molecular Structure file(s) for 2PE2 Structure Factors (150 Kb) Retrieve 2PE2 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2PE2 from S2C, [Save to disk] Re-refined 2pe2 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2PE2 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2PE2

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2PE2, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2pe2_A] [2pe2] SWISS-PROT database: [O15530] Domain organization of [PDPK1_HUMAN] by SWISSPFAM Domain found in 2PE2: [S_TKc ] by SMART

Other resources with information on 2PE2

Community annotation for 2PE2 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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