2PE9 Signaling Protein date Apr 02, 2007
title Nmr Based Structure Of The Open Conformation Of Lys48-Linked Ubiquitin Using Experimental Global Rotational Diffusion Te Nmr Relaxation Measurements
authors Y.Ryabov, D.Fushman
compound source
Molecule: Ubiquitin
Chain: A, B
Synonym: Ubiquitin
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
methodSolution NMR
Primary referenceStructural assembly of multidomain proteins and protein complexes guided by the overall rotational diffusion tensor., Ryabov Y, Fushman D, J Am Chem Soc. 2007 Jun 27;129(25):7894-902. Epub 2007 Jun 6. PMID:17550252
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (47 Kb) [Save to disk]
  • Biological Unit Coordinates (2pe9.pdb1.gz) 43 Kb
  • CSU: Contacts of Structural Units for 2PE9
  • Retrieve 2PE9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2PE9 from S2C, [Save to disk]
    • View 2PE9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2PE9
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2PE9, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2pe9] [2pe9_B] [2pe9_A]
  • SWISS-PROT database: [P62988]
  • Domain organization of [UBIQ_HUMAN] by SWISSPFAM
  • Domain found in 2PE9: [UBQ ] by SMART
    • Other resources with information on 2PE9
  • Community annotation for 2PE9 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science