2PFL	Lyase	date	May 26, 1999
title	Crystal Structure Of Pfl From E.Coli
authors	A.Becker, K.Fritz-Wolf, W.Kabsch, J.Knappe, S.Schultz, A.F.V.Wagn
compound		source
Molecule: Protein (Pyruvate Formate-Lyase) Chain: A, B Synonym: Pfl Ec: 2.3.1.54		Organism_scientific: Escherichia Coli Organism_taxid: 562
symmetry	Space Group: P 43 21 2	R_factor 0.202 R_Free 0.242
crystal cell	length a length b length c angle alpha angle beta angle gamma 159.020 159.020 160.640 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.90 Å
ligand	CL, NA	enzyme	Transferase E.C.2.3.1.54 BRENDA
related structures	by homologous chain: 1QHM
Gene Ontology	Chain Function Process Component A, B
Primary reference	Structure and mechanism of the glycyl radical enzyme pyruvate formate-lyase., Becker A, Fritz-Wolf K, Kabsch W, Knappe J, Schultz S, Volker Wagner AF, Nat Struct Biol 1999 Oct;6(10):969-75. PMID:10504733

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (255 Kb) [Save to disk] Biological Unit Coordinates (2pfl.pdb1.gz) 250 Kb LPC: Ligand-Protein Contacts for 2PFL CSU: Contacts of Structural Units for 2PFL Likely Quarternary Molecular Structure file(s) for 2PFL Structure Factors (376 Kb) Retrieve 2PFL in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2PFL from S2C, [Save to disk] Re-refined 2pfl structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2PFL in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2PFL

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2PFL, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d2pfla_, region A [Jmol] [rasmolscript] [script source]     - Domain d2pflb_, region B [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2pfl] [2pfl_B] [2pfl_A] SWISS-PROT database: [P09373] Domain organization of [PFLB_ECOLI] by SWISSPFAM

Other resources with information on 2PFL

Community annotation for 2PFL at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---