2PGR	Hydrolase	date	Apr 10, 2007
title	Crystal Structure Of Adenosine Deaminase From Plasmodium Viv Complex With Pentostatin
authors	E.T.Larson, E.A.Merritt, Structural Genomics Of Pathogenic Pro Consortium (Sgpp)
compound		source
Molecule: Adenosine Deaminase Chain: A Ec: 3.5.4.4 Engineered: Yes		Organism_scientific: Plasmodium Vivax Organism_common: Malaria Parasite P. Vivax Organism_taxid: 5855 Gene: Pv111245 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Bg1861
symmetry	Space Group: C 2 2 21	R_factor 0.168 R_Free 0.220
crystal cell	length a length b length c angle alpha angle beta angle gamma 143.488 146.386 50.034 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.30 Å
ligand	CCN, DCF, MSE, ZN	enzyme	Hydrolase E.C.3.5.4.4 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Structures of substrate- and inhibitor-bound adenosine deaminase from a human malaria parasite show a dramatic conformational change and shed light on drug selectivity., Larson ET, Deng W, Krumm BE, Napuli A, Mueller N, Van Voorhis WC, Buckner FS, Fan E, Lauricella A, DeTitta G, Luft J, Zucker F, Hol WG, Verlinde CL, Merritt EA, J Mol Biol. 2008 Sep 12;381(4):975-88. Epub 2008 Jun 24. PMID:18602399

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (68 Kb) [Save to disk] Biological Unit Coordinates (2pgr.pdb1.gz) 61 Kb LPC: Ligand-Protein Contacts for 2PGR CSU: Contacts of Structural Units for 2PGR Likely Quarternary Molecular Structure file(s) for 2PGR Structure Factors (644 Kb) Retrieve 2PGR in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2PGR from S2C, [Save to disk] Re-refined 2pgr structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2PGR in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2PGR

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2PGR, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2pgr_A] [2pgr] SWISS-PROT database: [A5KE01] Domain organization of [A5KE01_PLAVI] by SWISSPFAM

Other resources with information on 2PGR

Community annotation for 2PGR at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---