2PGX Structural Genomics, Unknown Function date Apr 10, 2007
title Crystal Structure Of Upf0341 Protein Yhiq From E. Coli, Nort Structural Genomics Target Er585
authors F.Forouhar, M.Su, J.Seetharaman, H.Janjua, Y.Fang, R.Xiao, J.Liu, M T.B.Acton, G.T.Montelione, L.Tong, J.F.Hunt, Northeast Structur Genomics Consortium (Nesg)
compound source
Molecule: Upf0341 Protein Yhiq
Chain: A
Engineered: Yes
 Organism_scientific: Escherichia Coli O157:H7
Organism_taxid: 83334
Strain: Edl933, Ehec
Atcc: 700927
Gene: Yhiq, Z4897, Ecs4369
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)+Magic
Expression_system_vector_type: Plasmid
Expression_system_vector: Bl21
Expression_system_plasmid: Pet21
symmetry Space Group: P 21 21 21
R_factor 0.228 R_Free 0.243
crystal
cell
length a length b length c angle alpha angle beta angle gamma
40.987 74.410 78.122 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand MSE enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (46 Kb) [Save to disk]
  • Biological Unit Coordinates (2pgx.pdb1.gz) 42 Kb
  • LPC: Ligand-Protein Contacts for 2PGX
  • CSU: Contacts of Structural Units for 2PGX
  • Likely Quarternary Molecular Structure file(s) for 2PGX
  • Structure Factors (493 Kb)
  • Retrieve 2PGX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2PGX from S2C, [Save to disk]
  • Re-refined 2pgx structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2PGX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2PGX
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2PGX, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2pgx] [2pgx_A]
  • SWISS-PROT database: [P68567]
  • Domain organization of [YHIQ_ECOLI] by SWISSPFAM
    • Other resources with information on 2PGX
  • Community annotation for 2PGX at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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