2PHN Ligase date Apr 11, 2007
title Crystal Structure Of An Amide Bond Forming F420-Gamma Glutam From Archaeoglobus Fulgidus
authors B.Nocek, E.Evdokimova, M.Kudritska, A.Edwards, A.Savchenko, A.Joa Midwest Center For Structural Genomics (Mcsg)
compound source
Molecule: F420-0:Gamma-Glutamyl Ligase
Chain: A, B
Ec: 6.3.2.-
Engineered: Yes
Organism_scientific: Archaeoglobus Fulgidus Dsm 4304
Organism_taxid: 224325
Strain: Dsm 4304, Vc-16, Jcm 9628, Nbrc 100126
Atcc: 49558
Gene: Cofe, Af_2256
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21gold
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet15b
symmetry Space Group: P 41 21 2
R_factor 0.160 R_Free 0.190
crystal
cell
length a length b length c angle alpha angle beta angle gamma
98.367 98.367 94.347 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.35 Å
ligand ACT, EDO, GDP, GOL, MN enzyme Ligase E.C.6.3.2 BRENDA
Gene AF
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructure of an Amide Bond Forming F(420):gammagamma-glutamyl Ligase from Archaeoglobus Fulgidus - A Member of a New Family of Non-ribosomal Peptide Synthases., Nocek B, Evdokimova E, Proudfoot M, Kudritska M, Grochowski LL, White RH, Savchenko A, Yakunin AF, Edwards A, Joachimiak A, J Mol Biol. 2007 Sep 14;372(2):456-69. Epub 2007 Jun 29. PMID:17669425
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (193 Kb) [Save to disk]
  • Biological Unit Coordinates (2phn.pdb1.gz) 186 Kb
  • LPC: Ligand-Protein Contacts for 2PHN
  • CSU: Contacts of Structural Units for 2PHN
  • Likely Quarternary Molecular Structure file(s) for 2PHN
  • Structure Factors (721 Kb)
  • Retrieve 2PHN in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2PHN from S2C, [Save to disk]
  • Re-refined 2phn structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2PHN in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2PHN
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2PHN, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2phn] [2phn_A] [2phn_B]
  • SWISS-PROT database: [O28028]
  • Domain organization of [COFE_ARCFU] by SWISSPFAM
  • Other resources with information on 2PHN
  • Community annotation for 2PHN at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science