2PIJ Transcription date Apr 13, 2007
title Structure Of The Cro Protein From Prophage Pfl 6 In Pseudomo Fluorescens Pf-5
authors C.G.Roessler, S.A.Roberts, W.R.Montfort, M.H.J.Cordes
compound source
Molecule: Prophage Pfl 6 Cro
Chain: A, B
Engineered: Yes
Organism_scientific: Pseudomonas Fluorescens
Organism_taxid: 220664
Strain: Pf-5
Gene: Prophage Pfl 6 Cro
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet21b
symmetry Space Group: P 31 2 1
R_factor 0.218 R_Free 0.271
crystal
cell
length a length b length c angle alpha angle beta angle gamma
40.940 40.940 123.500 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.70 Å
ligand BCT, DTT, MSE, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceTransitive homology-guided structural studies lead to discovery of Cro proteins with 40% sequence identity but different folds., Roessler CG, Hall BM, Anderson WJ, Ingram WM, Roberts SA, Montfort WR, Cordes MH, Proc Natl Acad Sci U S A. 2008 Feb 19;105(7):2343-8. Epub 2008 Jan 28. PMID:18227506
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (50 Kb) [Save to disk]
  • Biological Unit Coordinates (2pij.pdb1.gz) 41 Kb
  • LPC: Ligand-Protein Contacts for 2PIJ
  • CSU: Contacts of Structural Units for 2PIJ
  • Likely Quarternary Molecular Structure file(s) for 2PIJ
  • Structure Factors (1224 Kb)
  • Retrieve 2PIJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2PIJ from S2C, [Save to disk]
  • Re-refined 2pij structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2PIJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2PIJ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2PIJ, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2pij_B] [2pij_A] [2pij]
  • SWISS-PROT database: [A6STU3]
  • Domain organization of [A6STU3_PSEF5] by SWISSPFAM
  • Other resources with information on 2PIJ
  • Community annotation for 2PIJ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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