2PJA Hydrolase date Apr 15, 2007
title Crystal Structure Of Activated Porcine Pancreatic Carboxypep 3-{[(R)-1-((S)-2-Benzyloxycarbonylamino-3-Phenyl-Propionyla Methyl-Propyl]-Hydroxy-Phosphinoyl}-2-(3-Guanidino-Phenyl)- Acid Complex
authors M.Adler, M.Whitlow
compound source
Molecule: Carboxypeptidase B
Chain: A, B, C
Fragment: Catalytic Domain
Ec: 3.4.17.2
Organism_scientific: Sus Scrofa
Organism_common: Pig
Organism_taxid: 9823
symmetry Space Group: P 21 21 21
R_factor 0.189 R_Free 0.219
crystal
cell
length a length b length c angle alpha angle beta angle gamma
66.964 96.379 135.641 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.70 Å
ligand 33Z, ZN enzyme Hydrolase E.C.3.4.17.2 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Primary referenceStructures of potent selective peptide mimetics bound to carboxypeptidase B., Adler M, Buckman B, Bryant J, Chang Z, Chu K, Emayan K, Hrvatin P, Islam I, Morser J, Sukovich D, West C, Yuan S, Whitlow M, Acta Crystallogr D Biol Crystallogr. 2008 Feb;64(Pt 2):149-57. Epub 2008, Jan 16. PMID:18219114
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (164 Kb) [Save to disk]
  • Biological Unit Coordinates (2pja.pdb1.gz) 55 Kb
  • Biological Unit Coordinates (2pja.pdb2.gz) 55 Kb
  • Biological Unit Coordinates (2pja.pdb3.gz) 55 Kb
  • LPC: Ligand-Protein Contacts for 2PJA
  • CSU: Contacts of Structural Units for 2PJA
  • Likely Quarternary Molecular Structure file(s) for 2PJA
  • Structure Factors (761 Kb)
  • Retrieve 2PJA in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2PJA from S2C, [Save to disk]
  • Re-refined 2pja structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2PJA in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2PJA
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2PJA, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2pja] [2pja_A] [2pja_C] [2pja_B]
  • SWISS-PROT database: [P09955]
  • Domain organization of [CBPB1_PIG] by SWISSPFAM
  • Domain found in 2PJA: [Zn_pept ] by SMART
  • Other resources with information on 2PJA
  • Community annotation for 2PJA at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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