2PJH Transport Protein date Apr 16, 2007
title Strctural Model Of The P97 N Domain- Npl4 Ubd Complex
authors R.Isaacson, V.E.Pye, S.Simpson, H.H.Meyer, X.Zhang, P.Freemont
compound source
Molecule: Nuclear Protein Localization Protein 4 Homolog
Chain: A
Fragment: N Domain (Residues 1-80)
Synonym: Protein Npl4
Engineered: Yes
Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Gene: P97
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21

Molecule: Transitional Endoplasmic Reticulum Atpase
Chain: B
Fragment: Ubd (Residues 21-213)
Synonym: Ter Atpase, 15s Mg2+, - Atpase P97 Subunit, Valosi Containing Protein, Vcp;
Engineered: Yes

Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Gene: Npl4
Expression_system: Escherichia Coli
Expression_system_taxid: 562
methodSolution NMR
note 2PJH is a representative structure
Primary referenceDetailed structural insights into the p97-Npl4-Ufd1 interface., Isaacson RL, Pye VE, Simpson P, Meyer HH, Zhang X, Freemont PS, Matthews S, J Biol Chem. 2007 Jul 20;282(29):21361-9. Epub 2007 May 9. PMID:17491009
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (86 Kb) [Save to disk]
  • Biological Unit Coordinates (2pjh.pdb1.gz) 81 Kb
  • CSU: Contacts of Structural Units for 2PJH
  • Retrieve 2PJH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2PJH from S2C, [Save to disk]
  • View 2PJH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2PJH
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2PJH, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2pjh_A] [2pjh_B] [2pjh]
  • SWISS-PROT database: [P60670] [Q01853]
  • Domain organization of [NPL4_MOUSE] [TERA_MOUSE] by SWISSPFAM
  • Domains found in 2PJH: [CDC48_2] [CDC48_N ] by SMART
  • Other resources with information on 2PJH
  • Community annotation for 2PJH at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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