2PJI Hydrolase date Apr 16, 2007
title Solution Structure Of Rhodostomin P48a Mutant
authors W.J.Chuang, Y.C.Liu, J.H.Shiu
compound source
Molecule: Rhodostoxin-Disintegrin Rhodostomin
Chain: A
Fragment: Residues 1-68
Ec: 3.4.24.-
Engineered: Yes
Mutation: Yes
 Organism_scientific: Calloselasma Rhodostoma
Organism_common: Malayan Pit Viper
Organism_taxid: 8717
Gene: Rhod
Expression_system: Pichia Pastoris
Expression_system_taxid: 4922
Expression_system_strain: X33
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Ppiczaa
methodSolution NMR
ligand
enzyme Hydrolase E.C.3.4.24 BRENDA
note 2PJI supersedes 1XAZ
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (320 Kb) [Save to disk]
  • Biological Unit Coordinates (2pji.pdb1.gz) 16 Kb
  • CSU: Contacts of Structural Units for 2PJI
  • Original NMR restraints for 2PJI from PDB
  • Retrieve 2PJI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2PJI from S2C, [Save to disk]
    • View 2PJI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2PJI
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2PJI, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2pji_A] [2pji]
  • SWISS-PROT database: [P30403]
  • Domain organization of [DISR_AGKRH] by SWISSPFAM
  • Domain found in 2PJI: [DISIN ] by SMART
    • Other resources with information on 2PJI
  • Community annotation for 2PJI at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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