2PKW Structural Genomics, Unknown Function date Apr 18, 2007
title Crystal Structure Of Upf0341 Protein Yhiq From Salmonella Ty Northeast Structural Genomics Consortium Target Str221
authors F.Forouhar, M.Su, J.Seetharaman, Y.Fang, R.Xiao, K.Cunningham, L. L.Owens, J.Liu, T.B.Acton, G.T.Montelione, L.Tong, J.F.Hunt, Nort Structural Genomics Consortium (Nesg)
compound source
Molecule: Upf0341 Protein Yhiq
Chain: A
Engineered: Yes
 Organism_scientific: Salmonella Typhimurium Lt2
Organism_taxid: 99287
Strain: Lt2, Sgsc 1412
Atcc: 700720
Gene: Yhiq, Stm3593
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)+Magic
Expression_system_vector_type: Plasmid
Expression_system_vector: Bl21
Expression_system_plasmid: Pet21
symmetry Space Group: P 21 21 21
R_factor 0.208 R_Free 0.259
crystal
cell
length a length b length c angle alpha angle beta angle gamma
41.967 70.248 77.788 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.10 Å
ligand MSE, TRS enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (47 Kb) [Save to disk]
  • Biological Unit Coordinates (2pkw.pdb1.gz) 43 Kb
  • LPC: Ligand-Protein Contacts for 2PKW
  • CSU: Contacts of Structural Units for 2PKW
  • Likely Quarternary Molecular Structure file(s) for 2PKW
  • Structure Factors (388 Kb)
  • Retrieve 2PKW in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2PKW from S2C, [Save to disk]
  • Re-refined 2pkw structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2PKW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2PKW
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2PKW, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2pkw] [2pkw_A]
  • SWISS-PROT database: [Q9X6G2]
  • Domain organization of [YHIQ_SALTY] by SWISSPFAM
    • Other resources with information on 2PKW
  • Community annotation for 2PKW at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science